Publication Network
Education Information
2013 - 2020
2013 - 2020Doctorate
Istanbul Technical University, Fen Bilimleri Enstitüsü, Kimya Mühendisliği, Turkey
2010 - 2013
2010 - 2013Postgraduate
Istanbul Technical University, Fen Bilimleri Enstitüsü, Kimya Mühendisliği, Turkey
2007 - 2010
2007 - 2010Undergraduate
Istanbul Technical University, Kimya-Metalurji Fakültesi, Kimya Mühendisliği, Turkey
Dissertations
2020
2020Doctorate
Exploring functional dynamıcs of bacterial and human ribosome structures via coarse grained techniques
Istanbul Technical University, Fen Bilimleri Enstitüsü, Chemical Engineering
2013
2013Postgraduate
Yüzey aktif maddelerle modifiye edilen klinoptilolitin atıksulardan hekzavalent krom gideriminde kullanımı
İstanbul Teknik Üniversitesi, Fen Bilimleri Enstitüsü, Kimya Mühendisliği
Research Areas
Computer Sciences, bioinformatics, Biocomputing, Chemical Engineering and Technology, Chemical Technologies, Environmental Chemistry and Technology, Engineering and Technology
Academic Titles / Tasks
2020 - Continues
2020 - ContinuesLecturer PhD
Istanbul Medeniyet University, --------------------------------, Bilim ve İleri Teknoloji Uygulama ve Araştırma Merkezi
2018 - 2019
2018 - 2019Lecturer
Istanbul Medeniyet University, Faculty Of Engineering And Natural Sciences , Mühendislik Ve Doğa Bilimleri Fakültesi
2017 - 2018
2017 - 2018Expert
Istanbul Medeniyet University, Faculty Of Engineering And Natural Sciences , Mühendislik Ve Doğa Bilimleri Fakültesi
2010 - 2017
2010 - 2017Research Assistant
Istanbul Technical University, Kimya-Metalurji Fakültesi , Kimya Mühendisliği
Managerial Experience
Articles Published in Journals That Entered SCI, SSCI and AHCI Indexes
2020
2020Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model
Guzel P. , Yildirim H. Z. , Yüce M., Kurkcuoglu O.
FRONTIERS IN MOLECULAR BIOSCIENCES, vol.7, 2020 (Journal Indexed in SCI)
2017
2017Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models
Guzel P. , Kurkcuoglu O.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, vol.1861, no.12, pp.3131-3141, 2017 (Journal Indexed in SCI)
2016
2016Removal of chromate from wastewater using amine-based-surfactant-modified clinoptilolite
GÜZEL P. , Aydın Y. A. , Deveci Aksoy N.
INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND TECHNOLOGY, vol.13, no.5, pp.1277-1288, 2016 (Journal Indexed in SCI)
Refereed Congress / Symposium Publications in Proceedings
2021
2021Study of Thioflavin T (ThT) as a Fluorescence Probe and Amyloid Fibril Formation from Lysozyme
Kaya D. , Güzel P. , Akbay N.
4th International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2021), Ankara, Turkey, 24 - 26 November 2021, pp.1
2021
2021Using Coarse-Grained Techniques to Explore Allosteric Signaling at Nascent Peptide Tunnel Entrance of Bacterial Ribosomes
Yüce M., Güzel P. , Kürkçüoğlu Levitas A. Ö.
IUPAC | CCCE 2021, Ontario, Canada, 13 - 20 August 2021, pp.1
2019
2019Bakteri ve İnsana Ait Ribozomal Komplekslerde Ribozomal Çıkış Tüneli-Peptidil Transferaz Merkezi Arasındaki Allosterik Etkileşimin İncelenmesi
GÜZEL P. , Kurkcuoglu O.
İstanbul Teknik Üniversitesi Kimya Mühendisliği Lisansüstü Sempozyumu, İstanbul, Turkey, 26 April 2019, pp.1
2018
2018Coarse-Grained Approaches to Analyze Ribosomal Complexes Dynamics: ENM and RedMD
GÜZEL P. , Kürkçüoğlu Ö.
International conference on applied mathematics, modeling and Life Sciences, İstanbul, Turkey, 03 October 2018, pp.100
2018
2018Investigating functional dynamics and allostery at macrolide binding regions on T. thermophilus ribosome
GÜZEL P. , Kurkcuoglu O.
22nd EuroQSAR: 22nd European Symposium on Quantitative Structure-Activity Relationships, Atina, Greece, 16 September 2018, pp.100
2018
2018Comparing Dynamical Behaviors of Bacterial and Human Ribosomal Complexes in Coarse-Grained Scale
GÜZEL P. , Kürkçüoğlu Ö.
International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2018), Ankara, Turkey, 26 April 2018, pp.175
2017
2017Exploring Functional Dynamics of the Human Ribosomal Structure using Elastic Network Model and Molecular Dynamics Simulations
GÜZEL P. , KURKCUOGLU O.
5th International BAU Drug Design Congress, İstanbul, Turkey, 19 October 2017, pp.1
2016
2016Allosteric Regulation Mechanisms in Myosin II Heavy Chain Investigated by k-Shortest Pathways and Elastic Network Models
GÜZEL P. , KURKCUOGLU O.
4th International BAU Drug Design Congress, İstanbul, Turkey, 13 October 2016, pp.1
2016
2016Bakteriyel ribozomda işlevsel merkezler arasındaki allosterik sinyalleşme yollarının incelenmesi
GÜZEL P. , KURKCUOGLU O.
12. Ulusal Kimya Mühendisligi Kongresi, İzmir, Ağustos 2016, İzmir, Turkey, 23 August 2016, pp.1
2015
2015Clarifiying Macrolide Binding Affinity on Different Ribosomal Structures by Elucidating Communication Pathways Between Macrolide Binding Site and Passed Through Tunnel
GÜZEL P. , KURKCUOGLU O.
3rd International BAU Drug Design Congress, İstanbul, Turkey, 01 October 2015, pp.1
2015
2015Investigating communication pathways between decoding center and peptidyl transferase center of the bacterial ribosome: Hints on new druggable sites
GÜZEL P. , KURKCUOGLU O.
X EWDD European Workshop in Drug Design, İtalya, Mayıs 2015, Siena, Italy, 17 May 2015, pp.1
2014
2014Flexibility analysis of communication pathways between distant functional sites on bacterial ribosome: Hints on new druggable sites
GÜZEL P. , KURKCUOGLU O.
Molecular Chemistry 2014: International Syposium, İstanbul, Turkey, 19 December 2014, pp.1
Books & Book Chapters
2021
2021Kaba Ölçekli Elastik Ağyapı Modelleri ve Bakteriyel Ribozomun Yapı-İşlev İlişkisi
Güzel P. , Kürkçüoğlu Levitas A. Ö.
in: Protein: Yapısı, Mühendisliği, Etkileşimleri, Dinamiği ve İlaç Tasarımındaki Yeri, Saliha Ece Acuner, Editor, Ankara Nobel Tıp Yayınevi, Ankara, pp.259-272, 2021
Edit Congress and Symposium Activities
2019
2019İstanbul Teknik Üniversitesi Kimya Mühendisliği Lisansüstü Sempozyumu
Attendee
İstanbul-Turkey
2019
2019İstanbul Medeniyet Üniversitesi 4. Ulusal Tıp Öğrenci Kongresi
Attendee
İstanbul-Turkey
2018
2018International Conference on Applied Mathematics, Modeling and Life Sciences (ICAMLS'18)
Attendee
İstanbul-Turkey
2018
201822nd European Symposium on Quantitative Structure-Activity Relationship (22nd Euroqsar)
Attendee
Athens-Greece
2018
2018International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2018)
Attendee
Ankara-Turkey
2017
20175th International BAU Drug Design Congress
Attendee
İstanbul-Turkey
2016
20164th International BAU Drug Design Congress
Attendee
İstanbul-Turkey
2016
201612. Ulusal Kimya Mühendisligi Kongresi
Attendee
İzmir-Turkey
2015
20153rd International BAU Drug Design Congress
Attendee
İstanbul-Turkey
2015
2015X EWDD European Workshop in Drug Design
Attendee
İtalya-Italy
Scholarships
2013 - Continues
2013 - Continues2211/E-Yurtiçi Doğrudan Doktora Burs Programı
TUBITAK
2010 - Continues
2010 - Continues