Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Time-dependent re-organization of biological processes by the analysis of the dynamic transcriptional response of yeast cells to doxorubicin

KARABEKMEZ M. E. , Taymaz-Nikerel H., Eraslan S., KIRDAR B.
MOLECULAR OMICS, vol.17, pp.572-582, 2021 (Peer-Reviewed Journal) Sustainable Development identifier identifier identifier

Integrative genome-wide analysis of long-term effects of doxorubicin on yeast cells

Taymaz-Nikerel H., Karabekmez E., Eraslan S., Kirdar B.
NEW BIOTECHNOLOGY, vol.44, 2018 (Peer-Reviewed Journal) identifier

Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells

Taymaz-Nikerel H., Karabekmez M. E. , Eraslan S., Kirdar B.
SCIENTIFIC REPORTS, vol.8, 2018 (Peer-Reviewed Journal) Sustainable Development identifier identifier identifier

A novel topological centrality measure capturing biologically important proteins

Karabekmez M. E. , Kirdar B.
MOLECULAR BIOSYSTEMS, vol.12, no.2, pp.666-673, 2016 (Peer-Reviewed Journal) Sustainable Development identifier identifier identifier

A Novel Strategy for Selection and Validation of Reference Genes in Dynamic Multidimensional Experimental Design in Yeast

Cankorur-Cetinkaya A., Dereli E., Eraslan S., Karabekmez E., Dikicioglu D., Kirdar B.
PLOS ONE, vol.7, no.6, 2012 (Peer-Reviewed Journal) identifier identifier identifier

How yeast re-programmes its transcriptional profile in response to different nutrient impulses

Dikicioglu D., Karabekmez E., Rash B., Pir P., Kirdar B., Oliver S. G.
BMC SYSTEMS BIOLOGY, vol.5, 2011 (Peer-Reviewed Journal) Creative Commons License Sustainable Development identifier identifier identifier

Articles Published in Other Journals

Data Ethics in Digital Health and Genomics

KARABEKMEZ M. E.
NEW BIOETHICS-A MULTIDISCIPLINARY JOURNAL OF BIOTECHNOLOGY AND THE BODY, 2021 (Peer-Reviewed Journal) identifier identifier identifier

A modified Soft-thresholding Approach in the Transcriptomic Analysis of Adaptation of E.coli to Alternating Substrate Conditions

Karabekmez M. E.
Hittite Journal of Science and Engineering, vol.6, no.4, pp.315-318, 2019 (Peer-Reviewed Journal)

Lumping Protein Complexes to Reduce the Complexity of Human Protein-Protein Interaction Network

Karabekmez M. E.
Anadolu Kliniği Tıp Bilimleri Dergisi, vol.24, no.3, pp.231-236, 2019 (Peer-Reviewed Journal)

Yaşam Bilimlerinde Yeni Paradigma

Karabekmez M. E.
Hayat Sağlık, no.18, pp.12-15, 2018 (Non Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

Genetic Code, Bioinformatics and Biosecurity

Karabekmez M. E.
9. Uluslararası Lif ve Polimer Araştırmaları Sempozyumu, Eskişehir, Turkey, 18 June 2021, pp.42 Sustainable Development

Mathematical Modeling of Microbiota

Karabekmez M. E.
BİOTÜRKİYE, İstanbul, Turkey, 05 March 2020, pp.1

Yapay Zeka ve Kişiye Özel Moleküler Tıp

Karabekmez M. E.
Uluslararası Sağlıkta Yapay Zeka Kongresi, İzmir, Turkey, 16 January 2020

Adaptation of E.coli and Alternating Substrate Conditions

Karabekmez M. E.
2nd International Conference on Life and Engineering Sciences, İstanbul, Turkey, 27 - 29 June 2019, pp.1

An Attempt to Construct Context Specific Protein-protein Interaction Network of Yeast

Karabekmez M. E.
2nd International Conference on Life and Engineering Science, İstanbul, Turkey, 27 - 29 June 2019, pp.1

Integrated Multi-organism Genome Scale Metabolic Modeling of Microbial Community of P.aeruginosa and M.barkeri

Karabekmez M. E.
ECOMB 2019: Eurasian Congress on Molecular Biotechnology, Trabzon, Turkey, 19 - 21 September 2019, pp.163-171

A Novel Thresholding Procedure for Assessing Scale-Free Gene Co-Expression Networks

KARABEKMEZ M. E.
International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2018), Ankara, Turkey, 26 April 2018, pp.45

An integrative approach to analyze dynamic transcriptional response of yeast cells to DNA damage

KARABEKMEZ M. E.
FEBS Congress, Aydın, Turkey, 03 September 2016, pp.14-15

Dynamic response to DNA damage in S. cerevisiae

Karabekmez M. E. , Kirdar B.
22nd IUBMB Congress/37th FEBS Congress, Sevilla, Spain, 4 - 09 September 2012, vol.279, pp.482 identifier

Books & Book Chapters

Covid-19 Salgınında Veri Bilimini Yeniden Düşünmek

Karabekmez M. E.
in: Salgın Günlerinde Toplumu ve Siyaseti Yeniden Düşünmek, Abdulkadir Macit, Editor, İlem Yayınları, İstanbul, pp.107-120, 2020 Sustainable Development

Yaşam Bilimlerinde Veri-Yoğun Çağ: Yeni Nesil Dizileme

Karabekmez M. E.
in: Sağlık Alanında Büyük Veri, Hakan Ertin,Tuncay Sandıkçı, Editor, İsar Yayınları, İstanbul, pp.11-23, 2020